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Cluster: HRGMv2_3005_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3005_6 HRGMv2_3005_6_11 12256 13113 + GH43_17
TF HRGMv2_3005_6 HRGMv2_3005_6_12 13390 14025 + 0045030
pfam HRGMv2_3005_6 HRGMv2_3005_6_13 14295 14990 - PNP_UDP_1
TC HRGMv2_3005_6 HRGMv2_3005_6_14 15611 16324 - 3.A.1.24.5
TC HRGMv2_3005_6 HRGMv2_3005_6_15 16326 17321 - 3.A.1.24.2
TC HRGMv2_3005_6 HRGMv2_3005_6_16 17334 18185 - 3.A.1.24.5
NULL(UNKNOWN) HRGMv2_3005_6 HRGMv2_3005_6_17 18810 18917 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3005_6 HRGMv2_3005_6_18 19753 20712 - PseudoU_synth_2
CAZyme HRGMv2_3005_6 HRGMv2_3005_6_19 21106 22842 + GH129
Gene ID: HRGMv2_3005_6_11
Type: CAZyme
Location: 12256 - 13113 (+)
Gene ID: HRGMv2_3005_6_12
Type: TF
Location: 13390 - 14025 (+)
Gene ID: HRGMv2_3005_6_13
Type: pfam
Location: 14295 - 14990 (-)
Gene ID: HRGMv2_3005_6_14
Type: TC
Location: 15611 - 16324 (-)
Gene ID: HRGMv2_3005_6_15
Type: TC
Location: 16326 - 17321 (-)
Gene ID: HRGMv2_3005_6_16
Type: TC
Location: 17334 - 18185 (-)
Gene ID: HRGMv2_3005_6_17
Type:
Location: 18810 - 18917 (-)
Gene ID: HRGMv2_3005_6_18
Type: pfam
Location: 19753 - 20712 (-)
Gene ID: HRGMv2_3005_6_19
Type: CAZyme
Location: 21106 - 22842 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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