Cluster: HRGMv2_3001_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- CGC Family ID: CGCFAM_00328
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3001_2 | HRGMv2_3001_2_113 | 137256 | 137744 | + | 9.B.105.1.5 |
| pfam | HRGMv2_3001_2 | HRGMv2_3001_2_114 | 137737 | 138660 | + | PseudoU_synth_2 | S4 |
| CAZyme | HRGMv2_3001_2 | HRGMv2_3001_2_115 | 138937 | 141561 | + | GH24 |
| TC | HRGMv2_3001_2 | HRGMv2_3001_2_116 | 141727 | 143400 | - | 4.C.1.1.8 |
Gene ID: HRGMv2_3001_2_113
Type: TC
Location: 137256 - 137744 (+)
Type: TC
Location: 137256 - 137744 (+)
Gene ID: HRGMv2_3001_2_114
Type: pfam
Location: 137737 - 138660 (+)
Type: pfam
Location: 137737 - 138660 (+)
Gene ID: HRGMv2_3001_2_115
Type: CAZyme
Location: 138937 - 141561 (+)
Type: CAZyme
Location: 138937 - 141561 (+)
Gene ID: HRGMv2_3001_2_116
Type: TC
Location: 141727 - 143400 (-)
Type: TC
Location: 141727 - 143400 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.