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Cluster: HRGMv2_3001_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3001_2 HRGMv2_3001_2_38 50456 51343 + GT111
pfam HRGMv2_3001_2 HRGMv2_3001_2_39 51350 52456 + FAD_binding_2 | GLF | NAD_binding_8
pfam HRGMv2_3001_2 HRGMv2_3001_2_40 52534 54249 + Glft2_N
TC HRGMv2_3001_2 HRGMv2_3001_2_41 54468 55250 + 3.A.1.103.6
TC HRGMv2_3001_2 HRGMv2_3001_2_42 55266 56054 + 3.A.1.103.1
CAZyme HRGMv2_3001_2 HRGMv2_3001_2_43 56101 57174 + GT4
pfam HRGMv2_3001_2 HRGMv2_3001_2_44 57188 58495 + Big_2 | Big_2 | Big_2 | Big-like
TC HRGMv2_3001_2 HRGMv2_3001_2_45 58541 59938 + 9.B.18.1.1
Gene ID: HRGMv2_3001_2_38
Type: CAZyme
Location: 50456 - 51343 (+)
Gene ID: HRGMv2_3001_2_39
Type: pfam
Location: 51350 - 52456 (+)
Gene ID: HRGMv2_3001_2_40
Type: pfam
Location: 52534 - 54249 (+)
Gene ID: HRGMv2_3001_2_41
Type: TC
Location: 54468 - 55250 (+)
Gene ID: HRGMv2_3001_2_42
Type: TC
Location: 55266 - 56054 (+)
Gene ID: HRGMv2_3001_2_43
Type: CAZyme
Location: 56101 - 57174 (+)
Gene ID: HRGMv2_3001_2_44
Type: pfam
Location: 57188 - 58495 (+)
Gene ID: HRGMv2_3001_2_45
Type: TC
Location: 58541 - 59938 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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