Cluster: HRGMv2_3001_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3001
- CGC Family ID: CGCFAM_00546
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_122 | 140750 | 142000 | + | 2.A.49.9.2 |
| CAZyme | HRGMv2_3001_1 | HRGMv2_3001_1_123 | 142170 | 143147 | - | GT2 |
| CAZyme | HRGMv2_3001_1 | HRGMv2_3001_1_124 | 143174 | 144076 | - | GT2 |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_125 | 144073 | 145167 | - | 4.D.2.1.5 |
Gene ID: HRGMv2_3001_1_122
Type: TC
Location: 140750 - 142000 (+)
Type: TC
Location: 140750 - 142000 (+)
Gene ID: HRGMv2_3001_1_123
Type: CAZyme
Location: 142170 - 143147 (-)
Type: CAZyme
Location: 142170 - 143147 (-)
Gene ID: HRGMv2_3001_1_124
Type: CAZyme
Location: 143174 - 144076 (-)
Type: CAZyme
Location: 143174 - 144076 (-)
Gene ID: HRGMv2_3001_1_125
Type: TC
Location: 144073 - 145167 (-)
Type: TC
Location: 144073 - 145167 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.