Cluster: HRGMv2_3001_CGC2
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3001_1 | HRGMv2_3001_1_32 | 30772 | 32697 | + | GH13_39 |
| pfam | HRGMv2_3001_1 | HRGMv2_3001_1_33 | 32968 | 33813 | + | Aldo_ket_red |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_34 | 34120 | 34962 | - | 3.A.1.15.13 |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_35 | 34962 | 35708 | - | 3.A.1.15.13 |
| pfam | HRGMv2_3001_1 | HRGMv2_3001_1_36 | 35726 | 36685 | - | ZnuA |
| pfam | HRGMv2_3001_1 | HRGMv2_3001_1_37 | 36804 | 36977 | - | DUF3006 |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_38 | 37007 | 38284 | - | 9.A.40.2.4 |
| peptidase | HRGMv2_3001_1 | HRGMv2_3001_1_39 | 38612 | 39388 | + | S14.UPW |
| pfam | HRGMv2_3001_1 | HRGMv2_3001_1_40 | 39482 | 40435 | + | BacA |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_41 | 40537 | 43332 | + | 3.A.12.1.1 |
| pfam | HRGMv2_3001_1 | HRGMv2_3001_1_42 | 44163 | 45932 | - | MTHFR | S-methyl_trans |
| TF | HRGMv2_3001_1 | HRGMv2_3001_1_43 | 46009 | 46281 | - | SpoVT_AbrB |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_44 | 46452 | 47078 | + | 9.B.156.3.1 |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_45 | 47062 | 47580 | + | 9.B.156.3.1 |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_46 | 47617 | 49029 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_3001_1_32
Type: CAZyme
Location: 30772 - 32697 (+)
Type: CAZyme
Location: 30772 - 32697 (+)
Gene ID: HRGMv2_3001_1_33
Type: pfam
Location: 32968 - 33813 (+)
Type: pfam
Location: 32968 - 33813 (+)
Gene ID: HRGMv2_3001_1_34
Type: TC
Location: 34120 - 34962 (-)
Type: TC
Location: 34120 - 34962 (-)
Gene ID: HRGMv2_3001_1_35
Type: TC
Location: 34962 - 35708 (-)
Type: TC
Location: 34962 - 35708 (-)
Gene ID: HRGMv2_3001_1_36
Type: pfam
Location: 35726 - 36685 (-)
Type: pfam
Location: 35726 - 36685 (-)
Gene ID: HRGMv2_3001_1_37
Type: pfam
Location: 36804 - 36977 (-)
Type: pfam
Location: 36804 - 36977 (-)
Gene ID: HRGMv2_3001_1_38
Type: TC
Location: 37007 - 38284 (-)
Type: TC
Location: 37007 - 38284 (-)
Gene ID: HRGMv2_3001_1_39
Type: peptidase
Location: 38612 - 39388 (+)
Type: peptidase
Location: 38612 - 39388 (+)
Gene ID: HRGMv2_3001_1_40
Type: pfam
Location: 39482 - 40435 (+)
Type: pfam
Location: 39482 - 40435 (+)
Gene ID: HRGMv2_3001_1_41
Type: TC
Location: 40537 - 43332 (+)
Type: TC
Location: 40537 - 43332 (+)
Gene ID: HRGMv2_3001_1_42
Type: pfam
Location: 44163 - 45932 (-)
Type: pfam
Location: 44163 - 45932 (-)
Gene ID: HRGMv2_3001_1_43
Type: TF
Location: 46009 - 46281 (-)
Type: TF
Location: 46009 - 46281 (-)
Gene ID: HRGMv2_3001_1_44
Type: TC
Location: 46452 - 47078 (+)
Type: TC
Location: 46452 - 47078 (+)
Gene ID: HRGMv2_3001_1_45
Type: TC
Location: 47062 - 47580 (+)
Type: TC
Location: 47062 - 47580 (+)
Gene ID: HRGMv2_3001_1_46
Type: TC
Location: 47617 - 49029 (-)
Type: TC
Location: 47617 - 49029 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.