Cluster: HRGMv2_3001_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3001_16 | HRGMv2_3001_16_18 | 24065 | 26812 | - | CBM41 | GH13_14 |
| NULL(UNKNOWN) | HRGMv2_3001_16 | HRGMv2_3001_16_19 | 26993 | 27358 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3001_16 | HRGMv2_3001_16_20 | 27576 | 28859 | + | Aminotran_1_2 |
| TC | HRGMv2_3001_16 | HRGMv2_3001_16_21 | 29054 | 30502 | + | 2.A.6.4.2 |
| TC | HRGMv2_3001_16 | HRGMv2_3001_16_22 | 30499 | 31488 | + | 2.A.6.4.2 |
Gene ID: HRGMv2_3001_16_18
Type: CAZyme
Location: 24065 - 26812 (-)
Type: CAZyme
Location: 24065 - 26812 (-)
Gene ID: HRGMv2_3001_16_19
Type:
Location: 26993 - 27358 (-)
Type:
Location: 26993 - 27358 (-)
Gene ID: HRGMv2_3001_16_20
Type: STP
Location: 27576 - 28859 (+)
Type: STP
Location: 27576 - 28859 (+)
Gene ID: HRGMv2_3001_16_21
Type: TC
Location: 29054 - 30502 (+)
Type: TC
Location: 29054 - 30502 (+)
Gene ID: HRGMv2_3001_16_22
Type: TC
Location: 30499 - 31488 (+)
Type: TC
Location: 30499 - 31488 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.