Cluster: HRGMv2_3001_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- CGC Family ID: CGCFAM_02148
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3001_9 | HRGMv2_3001_9_89 | 89794 | 90654 | + | CE4 |
| pfam | HRGMv2_3001_9 | HRGMv2_3001_9_90 | 90707 | 91447 | + | Amidase_3 | SH3_4 | SH3_3 |
| pfam | HRGMv2_3001_9 | HRGMv2_3001_9_91 | 91803 | 92339 | - | PAP2 |
| TC | HRGMv2_3001_9 | HRGMv2_3001_9_92 | 92532 | 93542 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_3001_9_89
Type: CAZyme
Location: 89794 - 90654 (+)
Type: CAZyme
Location: 89794 - 90654 (+)
Gene ID: HRGMv2_3001_9_90
Type: pfam
Location: 90707 - 91447 (+)
Type: pfam
Location: 90707 - 91447 (+)
Gene ID: HRGMv2_3001_9_91
Type: pfam
Location: 91803 - 92339 (-)
Type: pfam
Location: 91803 - 92339 (-)
Gene ID: HRGMv2_3001_9_92
Type: TC
Location: 92532 - 93542 (-)
Type: TC
Location: 92532 - 93542 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.