Cluster: HRGMv2_3001_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_98 | 111696 | 112562 | - | 8.A.21.2.3 |
| CAZyme | HRGMv2_3001_3 | HRGMv2_3001_3_99 | 112836 | 116186 | - | CBM26 | GH13_28 |
| pfam | HRGMv2_3001_3 | HRGMv2_3001_3_100 | 116575 | 118092 | - | PPK2 | PPK2 |
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_101 | 118105 | 119403 | - | 2.A.86.1.8 |
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_102 | 119440 | 120312 | - | 2.A.115.1.1 |
Gene ID: HRGMv2_3001_3_98
Type: TC
Location: 111696 - 112562 (-)
Type: TC
Location: 111696 - 112562 (-)
Gene ID: HRGMv2_3001_3_99
Type: CAZyme
Location: 112836 - 116186 (-)
Type: CAZyme
Location: 112836 - 116186 (-)
Gene ID: HRGMv2_3001_3_100
Type: pfam
Location: 116575 - 118092 (-)
Type: pfam
Location: 116575 - 118092 (-)
Gene ID: HRGMv2_3001_3_101
Type: TC
Location: 118105 - 119403 (-)
Type: TC
Location: 118105 - 119403 (-)
Gene ID: HRGMv2_3001_3_102
Type: TC
Location: 119440 - 120312 (-)
Type: TC
Location: 119440 - 120312 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.