Cluster: HRGMv2_3001_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3001
- CGC Family ID: CGCFAM_10185
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3001_3 | HRGMv2_3001_3_34 | 36962 | 38620 | - | GH13_36 |
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_35 | 38693 | 39553 | - | 3.A.1.1.27 |
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_36 | 39550 | 41043 | - | 3.A.1.1.27 |
| pfam | HRGMv2_3001_3 | HRGMv2_3001_3_37 | 41173 | 42537 | - | SBP_bac_8 |
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_38 | 43376 | 46036 | - | 3.A.3.2.21 |
| pfam | HRGMv2_3001_3 | HRGMv2_3001_3_39 | 46241 | 46873 | + | Mntp | Mntp |
| CAZyme | HRGMv2_3001_3 | HRGMv2_3001_3_40 | 47227 | 47694 | - | CBM50 |
Gene ID: HRGMv2_3001_3_34
Type: CAZyme
Location: 36962 - 38620 (-)
Type: CAZyme
Location: 36962 - 38620 (-)
Gene ID: HRGMv2_3001_3_35
Type: TC
Location: 38693 - 39553 (-)
Type: TC
Location: 38693 - 39553 (-)
Gene ID: HRGMv2_3001_3_36
Type: TC
Location: 39550 - 41043 (-)
Type: TC
Location: 39550 - 41043 (-)
Gene ID: HRGMv2_3001_3_37
Type: pfam
Location: 41173 - 42537 (-)
Type: pfam
Location: 41173 - 42537 (-)
Gene ID: HRGMv2_3001_3_38
Type: TC
Location: 43376 - 46036 (-)
Type: TC
Location: 43376 - 46036 (-)
Gene ID: HRGMv2_3001_3_39
Type: pfam
Location: 46241 - 46873 (+)
Type: pfam
Location: 46241 - 46873 (+)
Gene ID: HRGMv2_3001_3_40
Type: CAZyme
Location: 47227 - 47694 (-)
Type: CAZyme
Location: 47227 - 47694 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.