Cluster: HRGMv2_3001_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3001_3 | HRGMv2_3001_3_2 | 1213 | 2301 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_3001_3 | HRGMv2_3001_3_3 | 2505 | 2840 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3001_3 | HRGMv2_3001_3_4 | 2968 | 3687 | + | PseudoU_synth_2 | S4 |
| TC | HRGMv2_3001_3 | HRGMv2_3001_3_5 | 3988 | 5097 | + | 3.A.1.1.26 |
Gene ID: HRGMv2_3001_3_2
Type: CAZyme
Location: 1213 - 2301 (-)
Type: CAZyme
Location: 1213 - 2301 (-)
Gene ID: HRGMv2_3001_3_3
Type:
Location: 2505 - 2840 (-)
Type:
Location: 2505 - 2840 (-)
Gene ID: HRGMv2_3001_3_4
Type: pfam
Location: 2968 - 3687 (+)
Type: pfam
Location: 2968 - 3687 (+)
Gene ID: HRGMv2_3001_3_5
Type: TC
Location: 3988 - 5097 (+)
Type: TC
Location: 3988 - 5097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.