Cluster: HRGMv2_3001_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3001_2 | HRGMv2_3001_2_232 | 257567 | 258109 | - | 2.A.88.3.1 |
| NULL(UNKNOWN) | HRGMv2_3001_2 | HRGMv2_3001_2_233 | 258262 | 258981 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3001_2 | HRGMv2_3001_2_234 | 259151 | 261292 | - | 3.A.3.32.3 |
| pfam | HRGMv2_3001_2 | HRGMv2_3001_2_235 | 261374 | 261721 | - | DUF6110 |
| CAZyme | HRGMv2_3001_2 | HRGMv2_3001_2_236 | 261905 | 263167 | - | GT4 |
Gene ID: HRGMv2_3001_2_232
Type: TC
Location: 257567 - 258109 (-)
Type: TC
Location: 257567 - 258109 (-)
Gene ID: HRGMv2_3001_2_233
Type:
Location: 258262 - 258981 (-)
Type:
Location: 258262 - 258981 (-)
Gene ID: HRGMv2_3001_2_234
Type: TC
Location: 259151 - 261292 (-)
Type: TC
Location: 259151 - 261292 (-)
Gene ID: HRGMv2_3001_2_235
Type: pfam
Location: 261374 - 261721 (-)
Type: pfam
Location: 261374 - 261721 (-)
Gene ID: HRGMv2_3001_2_236
Type: CAZyme
Location: 261905 - 263167 (-)
Type: CAZyme
Location: 261905 - 263167 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.