Cluster: HRGMv2_3001_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3001_1 | HRGMv2_3001_1_3 | 2535 | 3272 | - | GH25 |
| pfam | HRGMv2_3001_1 | HRGMv2_3001_1_4 | 3277 | 4914 | - | Wzy_C |
| TC | HRGMv2_3001_1 | HRGMv2_3001_1_5 | 4939 | 5625 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_3001_1_3
Type: CAZyme
Location: 2535 - 3272 (-)
Type: CAZyme
Location: 2535 - 3272 (-)
Gene ID: HRGMv2_3001_1_4
Type: pfam
Location: 3277 - 4914 (-)
Type: pfam
Location: 3277 - 4914 (-)
Gene ID: HRGMv2_3001_1_5
Type: TC
Location: 4939 - 5625 (-)
Type: TC
Location: 4939 - 5625 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.