Cluster: HRGMv2_2994_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2994
- CGC Family ID: CGCFAM_10276
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2994_13 | HRGMv2_2994_13_21 | 20672 | 21865 | - | 2.A.27.1.1 |
| STP | HRGMv2_2994_13 | HRGMv2_2994_13_22 | 21878 | 22867 | - | SBP_bac_3 |
| TF | HRGMv2_2994_13 | HRGMv2_2994_13_23 | 23090 | 23974 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2994_13 | HRGMv2_2994_13_24 | 24101 | 25642 | + | GH13_44 |
Gene ID: HRGMv2_2994_13_21
Type: TC
Location: 20672 - 21865 (-)
Type: TC
Location: 20672 - 21865 (-)
Gene ID: HRGMv2_2994_13_22
Type: STP
Location: 21878 - 22867 (-)
Type: STP
Location: 21878 - 22867 (-)
Gene ID: HRGMv2_2994_13_23
Type: TF
Location: 23090 - 23974 (-)
Type: TF
Location: 23090 - 23974 (-)
Gene ID: HRGMv2_2994_13_24
Type: CAZyme
Location: 24101 - 25642 (+)
Type: CAZyme
Location: 24101 - 25642 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
CAG-115
Species
CAG-115 sp000432175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2994_13_21 | vegan > omnivore | 1.21055 | 0.04443 |