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Cluster: HRGMv2_2994_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2994_64 HRGMv2_2994_64_3 1826 3835 + 1.B.52.2.1
TC HRGMv2_2994_64 HRGMv2_2994_64_4 3894 5174 - 1.B.52.2.2
CAZyme HRGMv2_2994_64 HRGMv2_2994_64_5 5424 8891 + GH2
TF HRGMv2_2994_64 HRGMv2_2994_64_6 8972 9853 + HTH_1
pfam HRGMv2_2994_64 HRGMv2_2994_64_7 9915 10328 - ATP-synt_DE | ATP-synt_DE_N
TC HRGMv2_2994_64 HRGMv2_2994_64_8 10341 11726 - 3.A.2.1.5
TC HRGMv2_2994_64 HRGMv2_2994_64_9 11723 12643 - 3.A.2.1.5
TC HRGMv2_2994_64 HRGMv2_2994_64_10 12655 14430 - 3.A.2.1.5
Gene ID: HRGMv2_2994_64_3
Type: TC
Location: 1826 - 3835 (+)
Gene ID: HRGMv2_2994_64_4
Type: TC
Location: 3894 - 5174 (-)
Gene ID: HRGMv2_2994_64_5
Type: CAZyme
Location: 5424 - 8891 (+)
Gene ID: HRGMv2_2994_64_6
Type: TF
Location: 8972 - 9853 (+)
Gene ID: HRGMv2_2994_64_7
Type: pfam
Location: 9915 - 10328 (-)
Gene ID: HRGMv2_2994_64_8
Type: TC
Location: 10341 - 11726 (-)
Gene ID: HRGMv2_2994_64_9
Type: TC
Location: 11723 - 12643 (-)
Gene ID: HRGMv2_2994_64_10
Type: TC
Location: 12655 - 14430 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2994_64_7 vegetarian > vegan 1.50340 0.00226

🧭 Explore Read Mapping of CGC

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