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Cluster: HRGMv2_2994_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2994_32 HRGMv2_2994_32_10 9061 9627 - 2.A.51.1.6
TC HRGMv2_2994_32 HRGMv2_2994_32_11 9624 10196 - 2.A.51.1.6
TC HRGMv2_2994_32 HRGMv2_2994_32_12 10317 11657 - 2.A.66.1.37
TF HRGMv2_2994_32 HRGMv2_2994_32_13 11654 12091 - MarR
TF HRGMv2_2994_32 HRGMv2_2994_32_14 12342 13337 + LacI
CAZyme HRGMv2_2994_32 HRGMv2_2994_32_15 13468 14979 + GH77
CAZyme HRGMv2_2994_32 HRGMv2_2994_32_16 15000 17360 + GT35
TC HRGMv2_2994_32 HRGMv2_2994_32_17 17760 19082 + 3.A.1.1.27
TC HRGMv2_2994_32 HRGMv2_2994_32_18 19315 20811 + 3.A.1.1.27
TC HRGMv2_2994_32 HRGMv2_2994_32_19 20811 21686 + 3.A.1.1.27
TF HRGMv2_2994_32 HRGMv2_2994_32_20 21704 22732 + LacI
CAZyme HRGMv2_2994_32 HRGMv2_2994_32_21 22732 24378 + GH13_36
CAZyme HRGMv2_2994_32 HRGMv2_2994_32_22 24392 26281 + GH13_14
Gene ID: HRGMv2_2994_32_10
Type: TC
Location: 9061 - 9627 (-)
Gene ID: HRGMv2_2994_32_11
Type: TC
Location: 9624 - 10196 (-)
Gene ID: HRGMv2_2994_32_12
Type: TC
Location: 10317 - 11657 (-)
Gene ID: HRGMv2_2994_32_13
Type: TF
Location: 11654 - 12091 (-)
Gene ID: HRGMv2_2994_32_14
Type: TF
Location: 12342 - 13337 (+)
Gene ID: HRGMv2_2994_32_15
Type: CAZyme
Location: 13468 - 14979 (+)
Gene ID: HRGMv2_2994_32_16
Type: CAZyme
Location: 15000 - 17360 (+)
Gene ID: HRGMv2_2994_32_17
Type: TC
Location: 17760 - 19082 (+)
Gene ID: HRGMv2_2994_32_18
Type: TC
Location: 19315 - 20811 (+)
Gene ID: HRGMv2_2994_32_19
Type: TC
Location: 20811 - 21686 (+)
Gene ID: HRGMv2_2994_32_20
Type: TF
Location: 21704 - 22732 (+)
Gene ID: HRGMv2_2994_32_21
Type: CAZyme
Location: 22732 - 24378 (+)
Gene ID: HRGMv2_2994_32_22
Type: CAZyme
Location: 24392 - 26281 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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