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Cluster: HRGMv2_2980_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2980_4 HRGMv2_2980_4_38 40801 42204 + 9.B.18.1.1
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_39 42205 43308 + GT4
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_40 43269 44507 + GT4
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_41 44477 45421 + GT2
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_42 45553 46707 + GT4
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_43 46724 47725 + GT2
NULL(UNKNOWN) HRGMv2_2980_4 HRGMv2_2980_4_44 47897 48976 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_45 48992 49918 + GT11
CAZyme HRGMv2_2980_4 HRGMv2_2980_4_46 49915 51012 + GT10
TC HRGMv2_2980_4 HRGMv2_2980_4_47 51042 52616 + 2.A.66.1.40
Gene ID: HRGMv2_2980_4_38
Type: TC
Location: 40801 - 42204 (+)
Gene ID: HRGMv2_2980_4_39
Type: CAZyme
Location: 42205 - 43308 (+)
Gene ID: HRGMv2_2980_4_40
Type: CAZyme
Location: 43269 - 44507 (+)
Gene ID: HRGMv2_2980_4_41
Type: CAZyme
Location: 44477 - 45421 (+)
Gene ID: HRGMv2_2980_4_42
Type: CAZyme
Location: 45553 - 46707 (+)
Gene ID: HRGMv2_2980_4_43
Type: CAZyme
Location: 46724 - 47725 (+)
Gene ID: HRGMv2_2980_4_44
Type:
Location: 47897 - 48976 (+)
Gene ID: HRGMv2_2980_4_45
Type: CAZyme
Location: 48992 - 49918 (+)
Gene ID: HRGMv2_2980_4_46
Type: CAZyme
Location: 49915 - 51012 (+)
Gene ID: HRGMv2_2980_4_47
Type: TC
Location: 51042 - 52616 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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