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Cluster: HRGMv2_2980_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2980_16 HRGMv2_2980_16_2 1582 3198 - 3.A.1.1.10
NULL(UNKNOWN) HRGMv2_2980_16 HRGMv2_2980_16_3 3403 5289 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2980_16 HRGMv2_2980_16_4 5286 7154 + GH20
CAZyme HRGMv2_2980_16 HRGMv2_2980_16_5 7166 9706 + GH3
CAZyme HRGMv2_2980_16 HRGMv2_2980_16_6 9833 11716 - GH20
peptidase HRGMv2_2980_16 HRGMv2_2980_16_7 11731 13152 - S12.UPW
TC HRGMv2_2980_16 HRGMv2_2980_16_8 13328 14188 - 3.A.1.1.11
TC HRGMv2_2980_16 HRGMv2_2980_16_9 14205 15155 - 3.A.1.1.11
Gene ID: HRGMv2_2980_16_2
Type: TC
Location: 1582 - 3198 (-)
Gene ID: HRGMv2_2980_16_3
Type:
Location: 3403 - 5289 (+)
Gene ID: HRGMv2_2980_16_4
Type: CAZyme
Location: 5286 - 7154 (+)
Gene ID: HRGMv2_2980_16_5
Type: CAZyme
Location: 7166 - 9706 (+)
Gene ID: HRGMv2_2980_16_6
Type: CAZyme
Location: 9833 - 11716 (-)
Gene ID: HRGMv2_2980_16_7
Type: peptidase
Location: 11731 - 13152 (-)
Gene ID: HRGMv2_2980_16_8
Type: TC
Location: 13328 - 14188 (-)
Gene ID: HRGMv2_2980_16_9
Type: TC
Location: 14205 - 15155 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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