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Cluster: HRGMv2_2980_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2980_6 HRGMv2_2980_6_35 34352 37249 - CBM40 | GH33
CAZyme HRGMv2_2980_6 HRGMv2_2980_6_36 37334 39013 - GH110
NULL(UNKNOWN) HRGMv2_2980_6 HRGMv2_2980_6_37 39067 41595 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2980_6 HRGMv2_2980_6_38 41601 43442 - GH129
pfam HRGMv2_2980_6 HRGMv2_2980_6_39 43542 45119 - DUF3502
TC HRGMv2_2980_6 HRGMv2_2980_6_40 45178 46092 - 3.A.1.1.29
TC HRGMv2_2980_6 HRGMv2_2980_6_41 46126 47052 - 3.A.1.1.10
TF HRGMv2_2980_6 HRGMv2_2980_6_42 47263 48366 + HTH_AraC
TC HRGMv2_2980_6 HRGMv2_2980_6_43 48356 50173 + 9.B.33.1.1
CAZyme HRGMv2_2980_6 HRGMv2_2980_6_44 50170 51744 + GH123
CAZyme HRGMv2_2980_6 HRGMv2_2980_6_45 51737 53032 + GH29
Gene ID: HRGMv2_2980_6_35
Type: CAZyme
Location: 34352 - 37249 (-)
Gene ID: HRGMv2_2980_6_36
Type: CAZyme
Location: 37334 - 39013 (-)
Gene ID: HRGMv2_2980_6_37
Type:
Location: 39067 - 41595 (-)
Gene ID: HRGMv2_2980_6_38
Type: CAZyme
Location: 41601 - 43442 (-)
Gene ID: HRGMv2_2980_6_39
Type: pfam
Location: 43542 - 45119 (-)
Gene ID: HRGMv2_2980_6_40
Type: TC
Location: 45178 - 46092 (-)
Gene ID: HRGMv2_2980_6_41
Type: TC
Location: 46126 - 47052 (-)
Gene ID: HRGMv2_2980_6_42
Type: TF
Location: 47263 - 48366 (+)
Gene ID: HRGMv2_2980_6_43
Type: TC
Location: 48356 - 50173 (+)
Gene ID: HRGMv2_2980_6_44
Type: CAZyme
Location: 50170 - 51744 (+)
Gene ID: HRGMv2_2980_6_45
Type: CAZyme
Location: 51737 - 53032 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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