Cluster: HRGMv2_2979_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2979
- CGC Family ID: CGCFAM_01574
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2979_3 | HRGMv2_2979_3_44 | 41938 | 44034 | - | CBM79 |
| peptidase | HRGMv2_2979_3 | HRGMv2_2979_3_45 | 44373 | 45080 | + | S14.UPW |
| TC | HRGMv2_2979_3 | HRGMv2_2979_3_46 | 45133 | 47631 | + | 3.A.12.1.1 |
| pfam | HRGMv2_2979_3 | HRGMv2_2979_3_47 | 47632 | 48450 | + | DUF1963 |
| pfam | HRGMv2_2979_3 | HRGMv2_2979_3_48 | 48464 | 50398 | + | Radical_SAM_N | DUF3362 |
| TC | HRGMv2_2979_3 | HRGMv2_2979_3_49 | 50422 | 51249 | + | 3.A.11.1.4 |
Gene ID: HRGMv2_2979_3_44
Type: CAZyme
Location: 41938 - 44034 (-)
Type: CAZyme
Location: 41938 - 44034 (-)
Gene ID: HRGMv2_2979_3_45
Type: peptidase
Location: 44373 - 45080 (+)
Type: peptidase
Location: 44373 - 45080 (+)
Gene ID: HRGMv2_2979_3_46
Type: TC
Location: 45133 - 47631 (+)
Type: TC
Location: 45133 - 47631 (+)
Gene ID: HRGMv2_2979_3_47
Type: pfam
Location: 47632 - 48450 (+)
Type: pfam
Location: 47632 - 48450 (+)
Gene ID: HRGMv2_2979_3_48
Type: pfam
Location: 48464 - 50398 (+)
Type: pfam
Location: 48464 - 50398 (+)
Gene ID: HRGMv2_2979_3_49
Type: TC
Location: 50422 - 51249 (+)
Type: TC
Location: 50422 - 51249 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp934474025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.