Cluster: HRGMv2_2979_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2979
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2979_2 | HRGMv2_2979_2_80 | 79139 | 80104 | + | GT2 |
| pfam | HRGMv2_2979_2 | HRGMv2_2979_2_81 | 80235 | 81545 | - | ABC2_membrane | ABC2_membrane_2 | ABC2_membrane_3 |
| TC | HRGMv2_2979_2 | HRGMv2_2979_2_82 | 81532 | 82272 | - | 3.A.1.132.8 |
| STP | HRGMv2_2979_2 | HRGMv2_2979_2_83 | 82414 | 85296 | + | SBP_bac_1 |
| pfam | HRGMv2_2979_2 | HRGMv2_2979_2_84 | 85308 | 86201 | + | BPD_transp_1 |
| TC | HRGMv2_2979_2 | HRGMv2_2979_2_85 | 86219 | 87091 | + | 3.A.1.1.39 |
Gene ID: HRGMv2_2979_2_80
Type: CAZyme
Location: 79139 - 80104 (+)
Type: CAZyme
Location: 79139 - 80104 (+)
Gene ID: HRGMv2_2979_2_81
Type: pfam
Location: 80235 - 81545 (-)
Type: pfam
Location: 80235 - 81545 (-)
Gene ID: HRGMv2_2979_2_82
Type: TC
Location: 81532 - 82272 (-)
Type: TC
Location: 81532 - 82272 (-)
Gene ID: HRGMv2_2979_2_83
Type: STP
Location: 82414 - 85296 (+)
Type: STP
Location: 82414 - 85296 (+)
Gene ID: HRGMv2_2979_2_84
Type: pfam
Location: 85308 - 86201 (+)
Type: pfam
Location: 85308 - 86201 (+)
Gene ID: HRGMv2_2979_2_85
Type: TC
Location: 86219 - 87091 (+)
Type: TC
Location: 86219 - 87091 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp934474025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.