Cluster: HRGMv2_2979_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2979
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2979_1 | HRGMv2_2979_1_142 | 154352 | 156274 | - | CBM35 | GH26 |
| pfam | HRGMv2_2979_1 | HRGMv2_2979_1_143 | 156430 | 159615 | - | AAA_23 | AAA_27 | AAA_29 | SbcC_Walker_B |
| pfam | HRGMv2_2979_1 | HRGMv2_2979_1_144 | 159612 | 160760 | - | Metallophos | SbcD_C | Metallophos_2 |
| CAZyme | HRGMv2_2979_1 | HRGMv2_2979_1_145 | 160920 | 162248 | + | GH5_4 |
| TC | HRGMv2_2979_1 | HRGMv2_2979_1_146 | 162479 | 164089 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_2979_1_142
Type: CAZyme
Location: 154352 - 156274 (-)
Type: CAZyme
Location: 154352 - 156274 (-)
Gene ID: HRGMv2_2979_1_143
Type: pfam
Location: 156430 - 159615 (-)
Type: pfam
Location: 156430 - 159615 (-)
Gene ID: HRGMv2_2979_1_144
Type: pfam
Location: 159612 - 160760 (-)
Type: pfam
Location: 159612 - 160760 (-)
Gene ID: HRGMv2_2979_1_145
Type: CAZyme
Location: 160920 - 162248 (+)
Type: CAZyme
Location: 160920 - 162248 (+)
Gene ID: HRGMv2_2979_1_146
Type: TC
Location: 162479 - 164089 (-)
Type: TC
Location: 162479 - 164089 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp934474025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.