Cluster: HRGMv2_2979_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2979
- CGC Family ID: CGCFAM_01591
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2979_14 | HRGMv2_2979_14_5 | 4367 | 5767 | - | 2.A.50.2.1 |
| pfam | HRGMv2_2979_14 | HRGMv2_2979_14_6 | 6027 | 7124 | - | Dockerin_1 |
| TC | HRGMv2_2979_14 | HRGMv2_2979_14_7 | 7320 | 8618 | + | 3.A.1.1.11 |
| TC | HRGMv2_2979_14 | HRGMv2_2979_14_8 | 8620 | 9507 | + | 3.A.1.1.11 |
| TC | HRGMv2_2979_14 | HRGMv2_2979_14_9 | 9504 | 10328 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2979_14 | HRGMv2_2979_14_10 | 10325 | 11455 | + | GH105 |
Gene ID: HRGMv2_2979_14_5
Type: TC
Location: 4367 - 5767 (-)
Type: TC
Location: 4367 - 5767 (-)
Gene ID: HRGMv2_2979_14_6
Type: pfam
Location: 6027 - 7124 (-)
Type: pfam
Location: 6027 - 7124 (-)
Gene ID: HRGMv2_2979_14_7
Type: TC
Location: 7320 - 8618 (+)
Type: TC
Location: 7320 - 8618 (+)
Gene ID: HRGMv2_2979_14_8
Type: TC
Location: 8620 - 9507 (+)
Type: TC
Location: 8620 - 9507 (+)
Gene ID: HRGMv2_2979_14_9
Type: TC
Location: 9504 - 10328 (+)
Type: TC
Location: 9504 - 10328 (+)
Gene ID: HRGMv2_2979_14_10
Type: CAZyme
Location: 10325 - 11455 (+)
Type: CAZyme
Location: 10325 - 11455 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp934474025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.