Cluster: HRGMv2_2979_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2979
- CGC Family ID: CGCFAM_00917
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2979_1 | HRGMv2_2979_1_105 | 116550 | 118241 | + | GH25 | GH25 |
| pfam | HRGMv2_2979_1 | HRGMv2_2979_1_106 | 118312 | 121623 | + | PDDEXK_1 | ADDB_N |
| pfam | HRGMv2_2979_1 | HRGMv2_2979_1_107 | 121625 | 125281 | + | UvrD-helicase | PDDEXK_1 | AAA_19 | UvrD_C | UvrD_C |
| TC | HRGMv2_2979_1 | HRGMv2_2979_1_108 | 125363 | 126748 | - | 9.B.160.1.10 |
Gene ID: HRGMv2_2979_1_105
Type: CAZyme
Location: 116550 - 118241 (+)
Type: CAZyme
Location: 116550 - 118241 (+)
Gene ID: HRGMv2_2979_1_106
Type: pfam
Location: 118312 - 121623 (+)
Type: pfam
Location: 118312 - 121623 (+)
Gene ID: HRGMv2_2979_1_107
Type: pfam
Location: 121625 - 125281 (+)
Type: pfam
Location: 121625 - 125281 (+)
Gene ID: HRGMv2_2979_1_108
Type: TC
Location: 125363 - 126748 (-)
Type: TC
Location: 125363 - 126748 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp934474025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.