Cluster: HRGMv2_2978_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2978
- CGC Family ID: CGCFAM_00611
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2978_59 | HRGMv2_2978_59_1 | 164 | 2116 | + | CBM35 | GH26 |
| pfam | HRGMv2_2978_59 | HRGMv2_2978_59_2 | 2210 | 4582 | - | UvrD-helicase | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor |
| TC | HRGMv2_2978_59 | HRGMv2_2978_59_3 | 4808 | 6154 | + | 2.A.22.5.3 |
| pfam | HRGMv2_2978_59 | HRGMv2_2978_59_4 | 6257 | 7021 | - | RlaP |
| CAZyme | HRGMv2_2978_59 | HRGMv2_2978_59_5 | 7048 | 8373 | - | GH3 |
Gene ID: HRGMv2_2978_59_1
Type: CAZyme
Location: 164 - 2116 (+)
Type: CAZyme
Location: 164 - 2116 (+)
Gene ID: HRGMv2_2978_59_2
Type: pfam
Location: 2210 - 4582 (-)
Type: pfam
Location: 2210 - 4582 (-)
Gene ID: HRGMv2_2978_59_3
Type: TC
Location: 4808 - 6154 (+)
Type: TC
Location: 4808 - 6154 (+)
Gene ID: HRGMv2_2978_59_4
Type: pfam
Location: 6257 - 7021 (-)
Type: pfam
Location: 6257 - 7021 (-)
Gene ID: HRGMv2_2978_59_5
Type: CAZyme
Location: 7048 - 8373 (-)
Type: CAZyme
Location: 7048 - 8373 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA5884
Species
UBA5884 sp900551505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.