Cluster: HRGMv2_2978_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2978
- CGC Family ID: CGCFAM_00004
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2978_48 | HRGMv2_2978_48_1 | 225 | 2318 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2978_48 | HRGMv2_2978_48_2 | 2424 | 3650 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2978_48 | HRGMv2_2978_48_3 | 3665 | 4786 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2978_48 | HRGMv2_2978_48_4 | 4817 | 6241 | + | GT5 |
| pfam | HRGMv2_2978_48 | HRGMv2_2978_48_5 | 6410 | 7267 | + | Cohesin |
| TC | HRGMv2_2978_48 | HRGMv2_2978_48_6 | 7298 | 8980 | - | 9.B.34.1.3 |
Gene ID: HRGMv2_2978_48_1
Type: CAZyme
Location: 225 - 2318 (+)
Type: CAZyme
Location: 225 - 2318 (+)
Gene ID: HRGMv2_2978_48_2
Type: pfam
Location: 2424 - 3650 (+)
Type: pfam
Location: 2424 - 3650 (+)
Gene ID: HRGMv2_2978_48_3
Type: pfam
Location: 3665 - 4786 (+)
Type: pfam
Location: 3665 - 4786 (+)
Gene ID: HRGMv2_2978_48_4
Type: CAZyme
Location: 4817 - 6241 (+)
Type: CAZyme
Location: 4817 - 6241 (+)
Gene ID: HRGMv2_2978_48_5
Type: pfam
Location: 6410 - 7267 (+)
Type: pfam
Location: 6410 - 7267 (+)
Gene ID: HRGMv2_2978_48_6
Type: TC
Location: 7298 - 8980 (-)
Type: TC
Location: 7298 - 8980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA5884
Species
UBA5884 sp900551505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.