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Cluster: HRGMv2_2978_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2978_33 HRGMv2_2978_33_4 3794 4693 - 3.A.1.147.8
TF HRGMv2_2978_33 HRGMv2_2978_33_5 4686 5045 - GntR
NULL(UNKNOWN) HRGMv2_2978_33 HRGMv2_2978_33_6 5491 5748 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2978_33 HRGMv2_2978_33_7 5965 7308 + 9.B.18.1.3
pfam HRGMv2_2978_33 HRGMv2_2978_33_8 7333 8409 + NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix
pfam HRGMv2_2978_33 HRGMv2_2978_33_9 8433 9467 + Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_2978_33 HRGMv2_2978_33_10 9918 11072 + GT4
Gene ID: HRGMv2_2978_33_4
Type: TC
Location: 3794 - 4693 (-)
Gene ID: HRGMv2_2978_33_5
Type: TF
Location: 4686 - 5045 (-)
Gene ID: HRGMv2_2978_33_6
Type:
Location: 5491 - 5748 (-)
Gene ID: HRGMv2_2978_33_7
Type: TC
Location: 5965 - 7308 (+)
Gene ID: HRGMv2_2978_33_8
Type: pfam
Location: 7333 - 8409 (+)
Gene ID: HRGMv2_2978_33_9
Type: pfam
Location: 8433 - 9467 (+)
Gene ID: HRGMv2_2978_33_10
Type: CAZyme
Location: 9918 - 11072 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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