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Cluster: HRGMv2_2978_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2978_32 HRGMv2_2978_32_3 3686 4699 + 3.A.1.1.20
TC HRGMv2_2978_32 HRGMv2_2978_32_4 4696 5571 + 3.A.1.1.34
TF HRGMv2_2978_32 HRGMv2_2978_32_5 5794 6318 + FUR
TC HRGMv2_2978_32 HRGMv2_2978_32_6 6257 7174 + 3.A.1.15.11
TC HRGMv2_2978_32 HRGMv2_2978_32_7 7175 7897 + 3.A.1.15.8
TC HRGMv2_2978_32 HRGMv2_2978_32_8 7878 8699 + 3.A.1.15.3
pfam HRGMv2_2978_32 HRGMv2_2978_32_9 8823 9443 + ABC_trans_CmpB
CAZyme HRGMv2_2978_32 HRGMv2_2978_32_10 9609 11165 + GH13_44
Gene ID: HRGMv2_2978_32_3
Type: TC
Location: 3686 - 4699 (+)
Gene ID: HRGMv2_2978_32_4
Type: TC
Location: 4696 - 5571 (+)
Gene ID: HRGMv2_2978_32_5
Type: TF
Location: 5794 - 6318 (+)
Gene ID: HRGMv2_2978_32_6
Type: TC
Location: 6257 - 7174 (+)
Gene ID: HRGMv2_2978_32_7
Type: TC
Location: 7175 - 7897 (+)
Gene ID: HRGMv2_2978_32_8
Type: TC
Location: 7878 - 8699 (+)
Gene ID: HRGMv2_2978_32_9
Type: pfam
Location: 8823 - 9443 (+)
Gene ID: HRGMv2_2978_32_10
Type: CAZyme
Location: 9609 - 11165 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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