Cluster: HRGMv2_2978_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2978
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2978_66 | HRGMv2_2978_66_1 | 2 | 2359 | + | GH2 |
| pfam | HRGMv2_2978_66 | HRGMv2_2978_66_2 | 2382 | 3527 | + | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 | Lactamase_B_6 |
| pfam | HRGMv2_2978_66 | HRGMv2_2978_66_3 | 3555 | 4661 | + | GrpE |
| TC | HRGMv2_2978_66 | HRGMv2_2978_66_4 | 4783 | 7515 | + | 1.A.33.1.2 |
Gene ID: HRGMv2_2978_66_1
Type: CAZyme
Location: 2 - 2359 (+)
Type: CAZyme
Location: 2 - 2359 (+)
Gene ID: HRGMv2_2978_66_2
Type: pfam
Location: 2382 - 3527 (+)
Type: pfam
Location: 2382 - 3527 (+)
Gene ID: HRGMv2_2978_66_3
Type: pfam
Location: 3555 - 4661 (+)
Type: pfam
Location: 3555 - 4661 (+)
Gene ID: HRGMv2_2978_66_4
Type: TC
Location: 4783 - 7515 (+)
Type: TC
Location: 4783 - 7515 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA5884
Species
UBA5884 sp900551505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.