Cluster: HRGMv2_2976_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2976
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2976_6 | HRGMv2_2976_6_72 | 84544 | 85719 | + | 2.A.4.7.4 |
| CAZyme | HRGMv2_2976_6 | HRGMv2_2976_6_73 | 85812 | 86615 | + | CE4 |
| TF | HRGMv2_2976_6 | HRGMv2_2976_6_74 | 86686 | 87324 | + | 0045030 |
| NULL(UNKNOWN) | HRGMv2_2976_6 | HRGMv2_2976_6_75 | 87415 | 87555 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2976_6 | HRGMv2_2976_6_76 | 87711 | 88565 | + | 2.A.115.1.5 |
Gene ID: HRGMv2_2976_6_72
Type: TC
Location: 84544 - 85719 (+)
Type: TC
Location: 84544 - 85719 (+)
Gene ID: HRGMv2_2976_6_73
Type: CAZyme
Location: 85812 - 86615 (+)
Type: CAZyme
Location: 85812 - 86615 (+)
Gene ID: HRGMv2_2976_6_74
Type: TF
Location: 86686 - 87324 (+)
Type: TF
Location: 86686 - 87324 (+)
Gene ID: HRGMv2_2976_6_75
Type:
Location: 87415 - 87555 (+)
Type:
Location: 87415 - 87555 (+)
Gene ID: HRGMv2_2976_6_76
Type: TC
Location: 87711 - 88565 (+)
Type: TC
Location: 87711 - 88565 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
HGM13006
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2976_6_73 | vegetarian > vegan | 1.45666 | 0.00241 |
| HRGMv2_2976_6_75 | vegetarian > vegan | 1.59924 | 0.00241 |
| HRGMv2_2976_6_76 | vegetarian > vegan | 1.39054 | 0.00241 |