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Cluster: HRGMv2_2976_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2976_3 HRGMv2_2976_3_107 125819 127150 - 2.A.66.1.33
pfam HRGMv2_2976_3 HRGMv2_2976_3_108 127331 128131 + DAPG_hydrolase
pfam HRGMv2_2976_3 HRGMv2_2976_3_109 128201 128848 + LemA
CAZyme HRGMv2_2976_3 HRGMv2_2976_3_110 129011 131527 + GH3
Gene ID: HRGMv2_2976_3_107
Type: TC
Location: 125819 - 127150 (-)
Gene ID: HRGMv2_2976_3_108
Type: pfam
Location: 127331 - 128131 (+)
Gene ID: HRGMv2_2976_3_109
Type: pfam
Location: 128201 - 128848 (+)
Gene ID: HRGMv2_2976_3_110
Type: CAZyme
Location: 129011 - 131527 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2976_3_107 vegetarian > vegan 2.07379 0.00241
HRGMv2_2976_3_108 vegetarian > vegan 1.49663 0.00241

🧭 Explore Read Mapping of CGC

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