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Cluster: HRGMv2_2976_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2976_27 HRGMv2_2976_27_6 7014 7271 + 2.A.36.2.1
TC HRGMv2_2976_27 HRGMv2_2976_27_7 7775 8200 + 2.A.36.2.1
TF HRGMv2_2976_27 HRGMv2_2976_27_8 8308 9261 - LacI
CAZyme HRGMv2_2976_27 HRGMv2_2976_27_9 9646 12243 + GH3
STP HRGMv2_2976_27 HRGMv2_2976_27_10 12280 13974 + SBP_bac_1
peptidase HRGMv2_2976_27 HRGMv2_2976_27_11 14039 15634 + S09.UPW
CAZyme HRGMv2_2976_27 HRGMv2_2976_27_12 15732 18080 + GH3
CAZyme HRGMv2_2976_27 HRGMv2_2976_27_13 18114 20564 + GH2
pfam HRGMv2_2976_27 HRGMv2_2976_27_14 20691 21476 + MatE
pfam HRGMv2_2976_27 HRGMv2_2976_27_15 21454 22071 + MatE
CAZyme HRGMv2_2976_27 HRGMv2_2976_27_16 22126 25593 + CBM67 | GH78
Gene ID: HRGMv2_2976_27_6
Type: TC
Location: 7014 - 7271 (+)
Gene ID: HRGMv2_2976_27_7
Type: TC
Location: 7775 - 8200 (+)
Gene ID: HRGMv2_2976_27_8
Type: TF
Location: 8308 - 9261 (-)
Gene ID: HRGMv2_2976_27_9
Type: CAZyme
Location: 9646 - 12243 (+)
Gene ID: HRGMv2_2976_27_10
Type: STP
Location: 12280 - 13974 (+)
Gene ID: HRGMv2_2976_27_11
Type: peptidase
Location: 14039 - 15634 (+)
Gene ID: HRGMv2_2976_27_12
Type: CAZyme
Location: 15732 - 18080 (+)
Gene ID: HRGMv2_2976_27_13
Type: CAZyme
Location: 18114 - 20564 (+)
Gene ID: HRGMv2_2976_27_14
Type: pfam
Location: 20691 - 21476 (+)
Gene ID: HRGMv2_2976_27_15
Type: pfam
Location: 21454 - 22071 (+)
Gene ID: HRGMv2_2976_27_16
Type: CAZyme
Location: 22126 - 25593 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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