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Cluster: HRGMv2_2976_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2976_24 HRGMv2_2976_24_20 17861 18838 - GT2
pfam HRGMv2_2976_24 HRGMv2_2976_24_21 18850 20106 - Polysacc_synt
TC HRGMv2_2976_24 HRGMv2_2976_24_22 20259 20999 - 3.A.1.3.13
TC HRGMv2_2976_24 HRGMv2_2976_24_23 21012 21680 - 3.A.1.3.10
STP HRGMv2_2976_24 HRGMv2_2976_24_24 21759 22802 - SBP_bac_3
TC HRGMv2_2976_24 HRGMv2_2976_24_25 23010 24086 - 3.A.1.2.25
TC HRGMv2_2976_24 HRGMv2_2976_24_26 24166 25158 - 3.A.1.2.8
TC HRGMv2_2976_24 HRGMv2_2976_24_27 25143 26114 - 3.A.1.2.15
TC HRGMv2_2976_24 HRGMv2_2976_24_28 26159 27694 - 3.A.1.2.26
Gene ID: HRGMv2_2976_24_20
Type: CAZyme
Location: 17861 - 18838 (-)
Gene ID: HRGMv2_2976_24_21
Type: pfam
Location: 18850 - 20106 (-)
Gene ID: HRGMv2_2976_24_22
Type: TC
Location: 20259 - 20999 (-)
Gene ID: HRGMv2_2976_24_23
Type: TC
Location: 21012 - 21680 (-)
Gene ID: HRGMv2_2976_24_24
Type: STP
Location: 21759 - 22802 (-)
Gene ID: HRGMv2_2976_24_25
Type: TC
Location: 23010 - 24086 (-)
Gene ID: HRGMv2_2976_24_26
Type: TC
Location: 24166 - 25158 (-)
Gene ID: HRGMv2_2976_24_27
Type: TC
Location: 25143 - 26114 (-)
Gene ID: HRGMv2_2976_24_28
Type: TC
Location: 26159 - 27694 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2976_24_22 vegetarian > vegan 1.09862 0.00241
HRGMv2_2976_24_23 vegetarian > vegan 1.84076 0.00241
HRGMv2_2976_24_27 vegetarian > vegan 1.78309 0.00241

🧭 Explore Read Mapping of CGC

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