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Cluster: HRGMv2_2976_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2976_15 HRGMv2_2976_15_35 35094 36071 - GT2
pfam HRGMv2_2976_15 HRGMv2_2976_15_36 36068 37540 - O-antigen_lig
CAZyme HRGMv2_2976_15 HRGMv2_2976_15_37 37869 40412 + GT4
NULL(UNKNOWN) HRGMv2_2976_15 HRGMv2_2976_15_38 40409 40912 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2976_15 HRGMv2_2976_15_39 40923 41342 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2976_15 HRGMv2_2976_15_40 41346 44621 + GT4
pfam HRGMv2_2976_15 HRGMv2_2976_15_41 44672 46033 - MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical
TC HRGMv2_2976_15 HRGMv2_2976_15_42 46026 47399 - 2.A.66.1.33
Gene ID: HRGMv2_2976_15_35
Type: CAZyme
Location: 35094 - 36071 (-)
Gene ID: HRGMv2_2976_15_36
Type: pfam
Location: 36068 - 37540 (-)
Gene ID: HRGMv2_2976_15_37
Type: CAZyme
Location: 37869 - 40412 (+)
Gene ID: HRGMv2_2976_15_38
Type:
Location: 40409 - 40912 (+)
Gene ID: HRGMv2_2976_15_39
Type:
Location: 40923 - 41342 (+)
Gene ID: HRGMv2_2976_15_40
Type: CAZyme
Location: 41346 - 44621 (+)
Gene ID: HRGMv2_2976_15_41
Type: pfam
Location: 44672 - 46033 (-)
Gene ID: HRGMv2_2976_15_42
Type: TC
Location: 46026 - 47399 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2976_15_42 vegetarian > vegan 2.66591 0.00241

🧭 Explore Read Mapping of CGC

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