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Cluster: HRGMv2_2976_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2976_12 HRGMv2_2976_12_37 41441 43993 - GH3
STP HRGMv2_2976_12 HRGMv2_2976_12_38 44125 44559 - CBS | CBS
STP HRGMv2_2976_12 HRGMv2_2976_12_39 44691 45974 - Aminotran_1_2
TC HRGMv2_2976_12 HRGMv2_2976_12_40 46644 47303 + 3.A.1.3.2
TC HRGMv2_2976_12 HRGMv2_2976_12_41 47284 47970 + 3.A.1.3.25
TC HRGMv2_2976_12 HRGMv2_2976_12_42 47963 48727 + 3.A.1.3.14
TC HRGMv2_2976_12 HRGMv2_2976_12_43 48952 49860 + 3.A.1.3.10
pfam HRGMv2_2976_12 HRGMv2_2976_12_44 49933 50616 - Hydrolase | Hydrolase_like | HAD_2
TC HRGMv2_2976_12 HRGMv2_2976_12_45 50613 52007 - 2.A.66.1.33
Gene ID: HRGMv2_2976_12_37
Type: CAZyme
Location: 41441 - 43993 (-)
Gene ID: HRGMv2_2976_12_38
Type: STP
Location: 44125 - 44559 (-)
Gene ID: HRGMv2_2976_12_39
Type: STP
Location: 44691 - 45974 (-)
Gene ID: HRGMv2_2976_12_40
Type: TC
Location: 46644 - 47303 (+)
Gene ID: HRGMv2_2976_12_41
Type: TC
Location: 47284 - 47970 (+)
Gene ID: HRGMv2_2976_12_42
Type: TC
Location: 47963 - 48727 (+)
Gene ID: HRGMv2_2976_12_43
Type: TC
Location: 48952 - 49860 (+)
Gene ID: HRGMv2_2976_12_44
Type: pfam
Location: 49933 - 50616 (-)
Gene ID: HRGMv2_2976_12_45
Type: TC
Location: 50613 - 52007 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Oscillospiraceae
→
Genus
HGM13006
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2976_12_38 vegetarian > vegan 2.25230 0.00241
HRGMv2_2976_12_44 vegetarian > vegan 1.69269 0.00241
HRGMv2_2976_12_45 vegetarian > vegan 1.75503 0.00241

🧭 Explore Read Mapping of CGC

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