Cluster: HRGMv2_2970_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2970
- CGC Family ID: CGCFAM_06786
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2970_29 | HRGMv2_2970_29_9 | 7696 | 8685 | - | GT2 |
| TC | HRGMv2_2970_29 | HRGMv2_2970_29_10 | 9122 | 10006 | + | 1.E.12.1.3 |
| pfam | HRGMv2_2970_29 | HRGMv2_2970_29_11 | 9990 | 10598 | + | DnaJ |
| pfam | HRGMv2_2970_29 | HRGMv2_2970_29_12 | 10674 | 11480 | - | Endopep_inhib |
| TC | HRGMv2_2970_29 | HRGMv2_2970_29_13 | 11704 | 14673 | - | 3.A.1.122.2 |
| pfam | HRGMv2_2970_29 | HRGMv2_2970_29_14 | 15014 | 15970 | + | PP2C | PP2C_2 |
| TC | HRGMv2_2970_29 | HRGMv2_2970_29_15 | 16077 | 17489 | - | 2.A.25.1.4 |
Gene ID: HRGMv2_2970_29_9
Type: CAZyme
Location: 7696 - 8685 (-)
Type: CAZyme
Location: 7696 - 8685 (-)
Gene ID: HRGMv2_2970_29_10
Type: TC
Location: 9122 - 10006 (+)
Type: TC
Location: 9122 - 10006 (+)
Gene ID: HRGMv2_2970_29_11
Type: pfam
Location: 9990 - 10598 (+)
Type: pfam
Location: 9990 - 10598 (+)
Gene ID: HRGMv2_2970_29_12
Type: pfam
Location: 10674 - 11480 (-)
Type: pfam
Location: 10674 - 11480 (-)
Gene ID: HRGMv2_2970_29_13
Type: TC
Location: 11704 - 14673 (-)
Type: TC
Location: 11704 - 14673 (-)
Gene ID: HRGMv2_2970_29_14
Type: pfam
Location: 15014 - 15970 (+)
Type: pfam
Location: 15014 - 15970 (+)
Gene ID: HRGMv2_2970_29_15
Type: TC
Location: 16077 - 17489 (-)
Type: TC
Location: 16077 - 17489 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.