Cluster: HRGMv2_2970_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2970
- CGC Family ID: CGCFAM_03245
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2970_13 | HRGMv2_2970_13_1 | 389 | 2110 | - | 1.A.11.2.7 |
| TC | HRGMv2_2970_13 | HRGMv2_2970_13_2 | 2372 | 3208 | - | 3.A.1.132.3 |
| pfam | HRGMv2_2970_13 | HRGMv2_2970_13_3 | 3240 | 4769 | - | PLDc | PLDc | PLDc_2 | PLDc_2 | PLDc_N |
| CAZyme | HRGMv2_2970_13 | HRGMv2_2970_13_4 | 4955 | 6553 | + | GH5_1 |
Gene ID: HRGMv2_2970_13_1
Type: TC
Location: 389 - 2110 (-)
Type: TC
Location: 389 - 2110 (-)
Gene ID: HRGMv2_2970_13_2
Type: TC
Location: 2372 - 3208 (-)
Type: TC
Location: 2372 - 3208 (-)
Gene ID: HRGMv2_2970_13_3
Type: pfam
Location: 3240 - 4769 (-)
Type: pfam
Location: 3240 - 4769 (-)
Gene ID: HRGMv2_2970_13_4
Type: CAZyme
Location: 4955 - 6553 (+)
Type: CAZyme
Location: 4955 - 6553 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.