Cluster: HRGMv2_2970_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2970
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2970_12 | HRGMv2_2970_12_5 | 2579 | 4483 | - | 3.A.1.135.5 |
| TC | HRGMv2_2970_12 | HRGMv2_2970_12_6 | 4480 | 6222 | - | 3.A.1.135.5 |
| TF | HRGMv2_2970_12 | HRGMv2_2970_12_7 | 6216 | 6674 | - | MarR |
| CAZyme | HRGMv2_2970_12 | HRGMv2_2970_12_8 | 7060 | 9519 | + | CBM76 | GH44 |
Gene ID: HRGMv2_2970_12_5
Type: TC
Location: 2579 - 4483 (-)
Type: TC
Location: 2579 - 4483 (-)
Gene ID: HRGMv2_2970_12_6
Type: TC
Location: 4480 - 6222 (-)
Type: TC
Location: 4480 - 6222 (-)
Gene ID: HRGMv2_2970_12_7
Type: TF
Location: 6216 - 6674 (-)
Type: TF
Location: 6216 - 6674 (-)
Gene ID: HRGMv2_2970_12_8
Type: CAZyme
Location: 7060 - 9519 (+)
Type: CAZyme
Location: 7060 - 9519 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.