Cluster: HRGMv2_2970_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2970
- CGC Family ID: CGCFAM_04293
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2970_112 | HRGMv2_2970_112_2 | 226 | 1671 | + | 9.B.18.1.3 |
| pfam | HRGMv2_2970_112 | HRGMv2_2970_112_3 | 2262 | 3290 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | HRGMv2_2970_112 | HRGMv2_2970_112_4 | 3324 | 4484 | + | GT4 |
| CAZyme | HRGMv2_2970_112 | HRGMv2_2970_112_5 | 4481 | 5638 | + | GT4 |
Gene ID: HRGMv2_2970_112_2
Type: TC
Location: 226 - 1671 (+)
Type: TC
Location: 226 - 1671 (+)
Gene ID: HRGMv2_2970_112_3
Type: pfam
Location: 2262 - 3290 (+)
Type: pfam
Location: 2262 - 3290 (+)
Gene ID: HRGMv2_2970_112_4
Type: CAZyme
Location: 3324 - 4484 (+)
Type: CAZyme
Location: 3324 - 4484 (+)
Gene ID: HRGMv2_2970_112_5
Type: CAZyme
Location: 4481 - 5638 (+)
Type: CAZyme
Location: 4481 - 5638 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.