Cluster: HRGMv2_2970_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2970
- CGC Family ID: CGCFAM_02333
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2970_97 | HRGMv2_2970_97_5 | 2953 | 3882 | + | 1.A.35.3.4 |
| TC | HRGMv2_2970_97 | HRGMv2_2970_97_6 | 4023 | 5267 | - | 9.A.40.2.4 |
| pfam | HRGMv2_2970_97 | HRGMv2_2970_97_7 | 5386 | 5871 | + | GtrA_DPMS_TM |
| CAZyme | HRGMv2_2970_97 | HRGMv2_2970_97_8 | 5893 | 8046 | + | CBM79 | CBM79 | GH5_4 |
| TC | HRGMv2_2970_97 | HRGMv2_2970_97_9 | 8192 | 8806 | + | 2.A.115.2.14 |
Gene ID: HRGMv2_2970_97_5
Type: TC
Location: 2953 - 3882 (+)
Type: TC
Location: 2953 - 3882 (+)
Gene ID: HRGMv2_2970_97_6
Type: TC
Location: 4023 - 5267 (-)
Type: TC
Location: 4023 - 5267 (-)
Gene ID: HRGMv2_2970_97_7
Type: pfam
Location: 5386 - 5871 (+)
Type: pfam
Location: 5386 - 5871 (+)
Gene ID: HRGMv2_2970_97_8
Type: CAZyme
Location: 5893 - 8046 (+)
Type: CAZyme
Location: 5893 - 8046 (+)
Gene ID: HRGMv2_2970_97_9
Type: TC
Location: 8192 - 8806 (+)
Type: TC
Location: 8192 - 8806 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.