Cluster: HRGMv2_2970_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2970
- CGC Family ID: CGCFAM_00532
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2970_57 | HRGMv2_2970_57_3 | 887 | 2083 | - | GT4 |
| pfam | HRGMv2_2970_57 | HRGMv2_2970_57_4 | 2169 | 2906 | - | ABC2_membrane_2 | ABC2_membrane_4 |
| TC | HRGMv2_2970_57 | HRGMv2_2970_57_5 | 2903 | 3622 | - | 3.A.1.124.3 |
| NULL(UNKNOWN) | HRGMv2_2970_57 | HRGMv2_2970_57_6 | 3710 | 4543 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2970_57 | HRGMv2_2970_57_7 | 4696 | 5553 | - | 2.A.7.2.1 |
| TF | HRGMv2_2970_57 | HRGMv2_2970_57_8 | 5564 | 6253 | - | Trans_reg_C |
| STP | HRGMv2_2970_57 | HRGMv2_2970_57_9 | 6246 | 7703 | - | HATPase_c | HisKA |
| TC | HRGMv2_2970_57 | HRGMv2_2970_57_10 | 7770 | 10082 | - | 3.A.3.23.2 |
| NULL(UNKNOWN) | HRGMv2_2970_57 | HRGMv2_2970_57_11 | 10806 | 10919 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2970_57 | HRGMv2_2970_57_12 | 11110 | 11868 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2970_57 | HRGMv2_2970_57_13 | 11868 | 12773 | - | 3.A.1.126.1 |
| TC | HRGMv2_2970_57 | HRGMv2_2970_57_14 | 12770 | 13684 | - | 3.A.1.126.1 |
Gene ID: HRGMv2_2970_57_3
Type: CAZyme
Location: 887 - 2083 (-)
Type: CAZyme
Location: 887 - 2083 (-)
Gene ID: HRGMv2_2970_57_4
Type: pfam
Location: 2169 - 2906 (-)
Type: pfam
Location: 2169 - 2906 (-)
Gene ID: HRGMv2_2970_57_5
Type: TC
Location: 2903 - 3622 (-)
Type: TC
Location: 2903 - 3622 (-)
Gene ID: HRGMv2_2970_57_6
Type:
Location: 3710 - 4543 (-)
Type:
Location: 3710 - 4543 (-)
Gene ID: HRGMv2_2970_57_7
Type: TC
Location: 4696 - 5553 (-)
Type: TC
Location: 4696 - 5553 (-)
Gene ID: HRGMv2_2970_57_8
Type: TF
Location: 5564 - 6253 (-)
Type: TF
Location: 5564 - 6253 (-)
Gene ID: HRGMv2_2970_57_9
Type: STP
Location: 6246 - 7703 (-)
Type: STP
Location: 6246 - 7703 (-)
Gene ID: HRGMv2_2970_57_10
Type: TC
Location: 7770 - 10082 (-)
Type: TC
Location: 7770 - 10082 (-)
Gene ID: HRGMv2_2970_57_11
Type:
Location: 10806 - 10919 (-)
Type:
Location: 10806 - 10919 (-)
Gene ID: HRGMv2_2970_57_12
Type:
Location: 11110 - 11868 (-)
Type:
Location: 11110 - 11868 (-)
Gene ID: HRGMv2_2970_57_13
Type: TC
Location: 11868 - 12773 (-)
Type: TC
Location: 11868 - 12773 (-)
Gene ID: HRGMv2_2970_57_14
Type: TC
Location: 12770 - 13684 (-)
Type: TC
Location: 12770 - 13684 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.