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Cluster: HRGMv2_2954_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2954_5 HRGMv2_2954_5_18 16636 17280 - 2.A.88.3.1
STP HRGMv2_2954_5 HRGMv2_2954_5_19 17619 17981 + Sigma70_r4
TC HRGMv2_2954_5 HRGMv2_2954_5_20 18007 19365 + 3.A.5.2.2
pfam HRGMv2_2954_5 HRGMv2_2954_5_21 19438 19683 + Ribosomal_S16
pfam HRGMv2_2954_5 HRGMv2_2954_5_22 19702 19935 + KH_KhpA-B
TC HRGMv2_2954_5 HRGMv2_2954_5_23 20324 21805 + 3.A.1.121.3
pfam HRGMv2_2954_5 HRGMv2_2954_5_24 21848 22117 - DUF1905
peptidase HRGMv2_2954_5 HRGMv2_2954_5_25 22167 23570 - M18.UPW
CAZyme HRGMv2_2954_5 HRGMv2_2954_5_26 23617 24207 - GH23
Gene ID: HRGMv2_2954_5_18
Type: TC
Location: 16636 - 17280 (-)
Gene ID: HRGMv2_2954_5_19
Type: STP
Location: 17619 - 17981 (+)
Gene ID: HRGMv2_2954_5_20
Type: TC
Location: 18007 - 19365 (+)
Gene ID: HRGMv2_2954_5_21
Type: pfam
Location: 19438 - 19683 (+)
Gene ID: HRGMv2_2954_5_22
Type: pfam
Location: 19702 - 19935 (+)
Gene ID: HRGMv2_2954_5_23
Type: TC
Location: 20324 - 21805 (+)
Gene ID: HRGMv2_2954_5_24
Type: pfam
Location: 21848 - 22117 (-)
Gene ID: HRGMv2_2954_5_25
Type: peptidase
Location: 22167 - 23570 (-)
Gene ID: HRGMv2_2954_5_26
Type: CAZyme
Location: 23617 - 24207 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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