dbCAN Logo

Cluster: HRGMv2_2954_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2954_4 HRGMv2_2954_4_53 51719 52633 + 8.A.5.1.7
TF HRGMv2_2954_4 HRGMv2_2954_4_54 52662 53063 - Fe_dep_repress
TC HRGMv2_2954_4 HRGMv2_2954_4_55 53180 54244 - 3.A.1.11.7
TC HRGMv2_2954_4 HRGMv2_2954_4_56 54338 55132 - 3.A.1.11.8
TC HRGMv2_2954_4 HRGMv2_2954_4_57 55129 55920 - 3.A.1.11.8
TC HRGMv2_2954_4 HRGMv2_2954_4_58 55917 57338 - 3.A.1.11.8
TC HRGMv2_2954_4 HRGMv2_2954_4_59 57936 59264 + 2.A.66.1.32
pfam HRGMv2_2954_4 HRGMv2_2954_4_60 59573 60703 + Cohesin
pfam HRGMv2_2954_4 HRGMv2_2954_4_61 60768 61625 - DegV
CAZyme HRGMv2_2954_4 HRGMv2_2954_4_62 61762 63843 + GH31_1
TC HRGMv2_2954_4 HRGMv2_2954_4_63 63836 64486 + 1.C.113.1.3
Gene ID: HRGMv2_2954_4_53
Type: TC
Location: 51719 - 52633 (+)
Gene ID: HRGMv2_2954_4_54
Type: TF
Location: 52662 - 53063 (-)
Gene ID: HRGMv2_2954_4_55
Type: TC
Location: 53180 - 54244 (-)
Gene ID: HRGMv2_2954_4_56
Type: TC
Location: 54338 - 55132 (-)
Gene ID: HRGMv2_2954_4_57
Type: TC
Location: 55129 - 55920 (-)
Gene ID: HRGMv2_2954_4_58
Type: TC
Location: 55917 - 57338 (-)
Gene ID: HRGMv2_2954_4_59
Type: TC
Location: 57936 - 59264 (+)
Gene ID: HRGMv2_2954_4_60
Type: pfam
Location: 59573 - 60703 (+)
Gene ID: HRGMv2_2954_4_61
Type: pfam
Location: 60768 - 61625 (-)
Gene ID: HRGMv2_2954_4_62
Type: CAZyme
Location: 61762 - 63843 (+)
Gene ID: HRGMv2_2954_4_63
Type: TC
Location: 63836 - 64486 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List