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Cluster: HRGMv2_2954_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2954_3 HRGMv2_2954_3_53 62148 63896 + 2.A.58.2.2
TC HRGMv2_2954_3 HRGMv2_2954_3_54 63948 64514 - 2.A.107.1.2
CAZyme HRGMv2_2954_3 HRGMv2_2954_3_55 64971 67169 + CBM26 | GH13_28
pfam HRGMv2_2954_3 HRGMv2_2954_3_56 67635 69101 - Mur_ligase | Mur_ligase_C | Mur_ligase_M
STP HRGMv2_2954_3 HRGMv2_2954_3_57 69716 71080 + SBP_bac_1
TC HRGMv2_2954_3 HRGMv2_2954_3_58 71225 72727 + 3.A.1.1.27
TC HRGMv2_2954_3 HRGMv2_2954_3_59 72724 73578 + 3.A.1.1.27
CAZyme HRGMv2_2954_3 HRGMv2_2954_3_60 73658 75295 + GH13_36
pfam HRGMv2_2954_3 HRGMv2_2954_3_61 75378 76106 - DNA_alkylation
TC HRGMv2_2954_3 HRGMv2_2954_3_62 76404 77048 + 9.B.18.1.3
Gene ID: HRGMv2_2954_3_53
Type: TC
Location: 62148 - 63896 (+)
Gene ID: HRGMv2_2954_3_54
Type: TC
Location: 63948 - 64514 (-)
Gene ID: HRGMv2_2954_3_55
Type: CAZyme
Location: 64971 - 67169 (+)
Gene ID: HRGMv2_2954_3_56
Type: pfam
Location: 67635 - 69101 (-)
Gene ID: HRGMv2_2954_3_57
Type: STP
Location: 69716 - 71080 (+)
Gene ID: HRGMv2_2954_3_58
Type: TC
Location: 71225 - 72727 (+)
Gene ID: HRGMv2_2954_3_59
Type: TC
Location: 72724 - 73578 (+)
Gene ID: HRGMv2_2954_3_60
Type: CAZyme
Location: 73658 - 75295 (+)
Gene ID: HRGMv2_2954_3_61
Type: pfam
Location: 75378 - 76106 (-)
Gene ID: HRGMv2_2954_3_62
Type: TC
Location: 76404 - 77048 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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