Cluster: HRGMv2_2954_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2954
- CGC Family ID: CGCFAM_05920
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2954_29 | HRGMv2_2954_29_12 | 9861 | 10736 | + | 2.A.115.1.5 |
| pfam | HRGMv2_2954_29 | HRGMv2_2954_29_13 | 10887 | 11183 | + | Ribosomal_S6 |
| TC | HRGMv2_2954_29 | HRGMv2_2954_29_14 | 11221 | 11670 | + | 3.A.7.19.1 |
| pfam | HRGMv2_2954_29 | HRGMv2_2954_29_15 | 11718 | 11969 | + | Ribosomal_S18 |
| NULL(UNKNOWN) | HRGMv2_2954_29 | HRGMv2_2954_29_16 | 12366 | 12665 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2954_29 | HRGMv2_2954_29_17 | 12990 | 15275 | + | GH13_14 |
| CAZyme | HRGMv2_2954_29 | HRGMv2_2954_29_18 | 15369 | 18377 | + | GH13_14 |
Gene ID: HRGMv2_2954_29_12
Type: TC
Location: 9861 - 10736 (+)
Type: TC
Location: 9861 - 10736 (+)
Gene ID: HRGMv2_2954_29_13
Type: pfam
Location: 10887 - 11183 (+)
Type: pfam
Location: 10887 - 11183 (+)
Gene ID: HRGMv2_2954_29_14
Type: TC
Location: 11221 - 11670 (+)
Type: TC
Location: 11221 - 11670 (+)
Gene ID: HRGMv2_2954_29_15
Type: pfam
Location: 11718 - 11969 (+)
Type: pfam
Location: 11718 - 11969 (+)
Gene ID: HRGMv2_2954_29_16
Type:
Location: 12366 - 12665 (-)
Type:
Location: 12366 - 12665 (-)
Gene ID: HRGMv2_2954_29_17
Type: CAZyme
Location: 12990 - 15275 (+)
Type: CAZyme
Location: 12990 - 15275 (+)
Gene ID: HRGMv2_2954_29_18
Type: CAZyme
Location: 15369 - 18377 (+)
Type: CAZyme
Location: 15369 - 18377 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Scatavimonas
Species
Scatavimonas merdigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.