Cluster: HRGMv2_2952_CGC9
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2952
- CGC Family ID: CGCFAM_10203
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2952_3 | HRGMv2_2952_3_50 | 52926 | 54206 | - | GH18 |
| TF | HRGMv2_2952_3 | HRGMv2_2952_3_51 | 54388 | 55359 | - | HTH_5 |
| NULL(UNKNOWN) | HRGMv2_2952_3 | HRGMv2_2952_3_52 | 55506 | 56594 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2952_3 | HRGMv2_2952_3_53 | 56622 | 58025 | - | GH26 |
| pfam | HRGMv2_2952_3 | HRGMv2_2952_3_54 | 58130 | 58873 | - | ThuA |
| NULL(UNKNOWN) | HRGMv2_2952_3 | HRGMv2_2952_3_55 | 58925 | 60217 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2952_3 | HRGMv2_2952_3_56 | 60252 | 61226 | - | GH130_2 |
| NULL(UNKNOWN) | HRGMv2_2952_3 | HRGMv2_2952_3_57 | 61414 | 65622 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2952_3 | HRGMv2_2952_3_58 | 65647 | 67173 | - | SBP_bac_1 |
| TC | HRGMv2_2952_3 | HRGMv2_2952_3_59 | 67235 | 68233 | - | 3.A.1.1.11 |
| TC | HRGMv2_2952_3 | HRGMv2_2952_3_60 | 68256 | 69155 | - | 3.A.1.1.25 |
| pfam | HRGMv2_2952_3 | HRGMv2_2952_3_61 | 69187 | 71406 | - | DUF5696 |
| pfam | HRGMv2_2952_3 | HRGMv2_2952_3_62 | 71415 | 73568 | - | NHL | Yip1 |
| TC | HRGMv2_2952_3 | HRGMv2_2952_3_63 | 73591 | 74463 | - | 3.A.1.1.34 |
| TC | HRGMv2_2952_3 | HRGMv2_2952_3_64 | 74504 | 75433 | - | 3.A.1.1.11 |
| STP | HRGMv2_2952_3 | HRGMv2_2952_3_65 | 75469 | 78378 | - | SBP_bac_1 |
| TF | HRGMv2_2952_3 | HRGMv2_2952_3_66 | 78984 | 80006 | + | LacI |
| TC | HRGMv2_2952_3 | HRGMv2_2952_3_67 | 80365 | 80778 | + | 9.A.11.1.1 |
| TC | HRGMv2_2952_3 | HRGMv2_2952_3_68 | 80793 | 81809 | + | 9.A.11.1.1 |
Gene ID: HRGMv2_2952_3_50
Type: CAZyme
Location: 52926 - 54206 (-)
Type: CAZyme
Location: 52926 - 54206 (-)
Gene ID: HRGMv2_2952_3_51
Type: TF
Location: 54388 - 55359 (-)
Type: TF
Location: 54388 - 55359 (-)
Gene ID: HRGMv2_2952_3_52
Type:
Location: 55506 - 56594 (-)
Type:
Location: 55506 - 56594 (-)
Gene ID: HRGMv2_2952_3_53
Type: CAZyme
Location: 56622 - 58025 (-)
Type: CAZyme
Location: 56622 - 58025 (-)
Gene ID: HRGMv2_2952_3_54
Type: pfam
Location: 58130 - 58873 (-)
Type: pfam
Location: 58130 - 58873 (-)
Gene ID: HRGMv2_2952_3_55
Type:
Location: 58925 - 60217 (-)
Type:
Location: 58925 - 60217 (-)
Gene ID: HRGMv2_2952_3_56
Type: CAZyme
Location: 60252 - 61226 (-)
Type: CAZyme
Location: 60252 - 61226 (-)
Gene ID: HRGMv2_2952_3_57
Type:
Location: 61414 - 65622 (-)
Type:
Location: 61414 - 65622 (-)
Gene ID: HRGMv2_2952_3_58
Type: STP
Location: 65647 - 67173 (-)
Type: STP
Location: 65647 - 67173 (-)
Gene ID: HRGMv2_2952_3_59
Type: TC
Location: 67235 - 68233 (-)
Type: TC
Location: 67235 - 68233 (-)
Gene ID: HRGMv2_2952_3_60
Type: TC
Location: 68256 - 69155 (-)
Type: TC
Location: 68256 - 69155 (-)
Gene ID: HRGMv2_2952_3_61
Type: pfam
Location: 69187 - 71406 (-)
Type: pfam
Location: 69187 - 71406 (-)
Gene ID: HRGMv2_2952_3_62
Type: pfam
Location: 71415 - 73568 (-)
Type: pfam
Location: 71415 - 73568 (-)
Gene ID: HRGMv2_2952_3_63
Type: TC
Location: 73591 - 74463 (-)
Type: TC
Location: 73591 - 74463 (-)
Gene ID: HRGMv2_2952_3_64
Type: TC
Location: 74504 - 75433 (-)
Type: TC
Location: 74504 - 75433 (-)
Gene ID: HRGMv2_2952_3_65
Type: STP
Location: 75469 - 78378 (-)
Type: STP
Location: 75469 - 78378 (-)
Gene ID: HRGMv2_2952_3_66
Type: TF
Location: 78984 - 80006 (+)
Type: TF
Location: 78984 - 80006 (+)
Gene ID: HRGMv2_2952_3_67
Type: TC
Location: 80365 - 80778 (+)
Type: TC
Location: 80365 - 80778 (+)
Gene ID: HRGMv2_2952_3_68
Type: TC
Location: 80793 - 81809 (+)
Type: TC
Location: 80793 - 81809 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UMGS1623
Species
UMGS1623 sp902492895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.