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Cluster: HRGMv2_2932_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2932_12 HRGMv2_2932_12_6 4314 5420 + GT4
CAZyme HRGMv2_2932_12 HRGMv2_2932_12_7 5432 6625 + GT4
CAZyme HRGMv2_2932_12 HRGMv2_2932_12_8 6622 7716 + GT4
NULL(UNKNOWN) HRGMv2_2932_12 HRGMv2_2932_12_9 7718 8899 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2932_12 HRGMv2_2932_12_10 8871 10343 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2932_12 HRGMv2_2932_12_11 10346 11296 + GT2
pfam HRGMv2_2932_12 HRGMv2_2932_12_12 11305 12555 + Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4
pfam HRGMv2_2932_12 HRGMv2_2932_12_13 12568 13755 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_2932_12 HRGMv2_2932_12_14 13775 15232 + 2.A.66.2.6
Gene ID: HRGMv2_2932_12_6
Type: CAZyme
Location: 4314 - 5420 (+)
Gene ID: HRGMv2_2932_12_7
Type: CAZyme
Location: 5432 - 6625 (+)
Gene ID: HRGMv2_2932_12_8
Type: CAZyme
Location: 6622 - 7716 (+)
Gene ID: HRGMv2_2932_12_9
Type:
Location: 7718 - 8899 (+)
Gene ID: HRGMv2_2932_12_10
Type:
Location: 8871 - 10343 (+)
Gene ID: HRGMv2_2932_12_11
Type: CAZyme
Location: 10346 - 11296 (+)
Gene ID: HRGMv2_2932_12_12
Type: pfam
Location: 11305 - 12555 (+)
Gene ID: HRGMv2_2932_12_13
Type: pfam
Location: 12568 - 13755 (+)
Gene ID: HRGMv2_2932_12_14
Type: TC
Location: 13775 - 15232 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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