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Cluster: HRGMv2_2928_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2928_7 HRGMv2_2928_7_106 99817 101448 - 8.A.7.1.1
STP HRGMv2_2928_7 HRGMv2_2928_7_107 101514 101771 - PTS-HPr
TC HRGMv2_2928_7 HRGMv2_2928_7_108 101787 102287 - 4.A.1.1.1
STP HRGMv2_2928_7 HRGMv2_2928_7_109 102311 103288 - PfkB
CAZyme HRGMv2_2928_7 HRGMv2_2928_7_110 103308 104699 - GH32
TC HRGMv2_2928_7 HRGMv2_2928_7_111 104877 106274 - 4.A.1.2.1
pfam HRGMv2_2928_7 HRGMv2_2928_7_112 106846 107106 + HNH_repeat
pfam HRGMv2_2928_7 HRGMv2_2928_7_113 107121 108449 + DUF4430
TC HRGMv2_2928_7 HRGMv2_2928_7_114 108449 109312 + 3.A.1.32.2
TC HRGMv2_2928_7 HRGMv2_2928_7_115 109306 110859 + 3.A.1.32.2
Gene ID: HRGMv2_2928_7_106
Type: TC
Location: 99817 - 101448 (-)
Gene ID: HRGMv2_2928_7_107
Type: STP
Location: 101514 - 101771 (-)
Gene ID: HRGMv2_2928_7_108
Type: TC
Location: 101787 - 102287 (-)
Gene ID: HRGMv2_2928_7_109
Type: STP
Location: 102311 - 103288 (-)
Gene ID: HRGMv2_2928_7_110
Type: CAZyme
Location: 103308 - 104699 (-)
Gene ID: HRGMv2_2928_7_111
Type: TC
Location: 104877 - 106274 (-)
Gene ID: HRGMv2_2928_7_112
Type: pfam
Location: 106846 - 107106 (+)
Gene ID: HRGMv2_2928_7_113
Type: pfam
Location: 107121 - 108449 (+)
Gene ID: HRGMv2_2928_7_114
Type: TC
Location: 108449 - 109312 (+)
Gene ID: HRGMv2_2928_7_115
Type: TC
Location: 109306 - 110859 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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