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Cluster: HRGMv2_2928_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2928_7 HRGMv2_2928_7_40 40017 40748 - 3.A.1.132.1
TC HRGMv2_2928_7 HRGMv2_2928_7_41 40775 41707 - 3.A.1.132.4
CAZyme HRGMv2_2928_7 HRGMv2_2928_7_42 42203 45097 + GH48
TC HRGMv2_2928_7 HRGMv2_2928_7_43 45361 46815 + 3.D.10.1.4
pfam HRGMv2_2928_7 HRGMv2_2928_7_44 46829 47674 + QRPTase_C | QRPTase_N
TF HRGMv2_2928_7 HRGMv2_2928_7_45 47717 48592 + HTH_AraC | HTH_AraC
TC HRGMv2_2928_7 HRGMv2_2928_7_46 48653 49477 - 3.D.6.1.3
TC HRGMv2_2928_7 HRGMv2_2928_7_47 49586 50158 - 3.D.6.1.2
TC HRGMv2_2928_7 HRGMv2_2928_7_48 50158 50832 - 3.D.6.1.2
pfam HRGMv2_2928_7 HRGMv2_2928_7_49 50825 51349 - FMN_bind
TC HRGMv2_2928_7 HRGMv2_2928_7_50 51349 52296 - 3.D.6.1.2
TC HRGMv2_2928_7 HRGMv2_2928_7_51 52335 53612 - 3.D.6.1.2
Gene ID: HRGMv2_2928_7_40
Type: TC
Location: 40017 - 40748 (-)
Gene ID: HRGMv2_2928_7_41
Type: TC
Location: 40775 - 41707 (-)
Gene ID: HRGMv2_2928_7_42
Type: CAZyme
Location: 42203 - 45097 (+)
Gene ID: HRGMv2_2928_7_43
Type: TC
Location: 45361 - 46815 (+)
Gene ID: HRGMv2_2928_7_44
Type: pfam
Location: 46829 - 47674 (+)
Gene ID: HRGMv2_2928_7_45
Type: TF
Location: 47717 - 48592 (+)
Gene ID: HRGMv2_2928_7_46
Type: TC
Location: 48653 - 49477 (-)
Gene ID: HRGMv2_2928_7_47
Type: TC
Location: 49586 - 50158 (-)
Gene ID: HRGMv2_2928_7_48
Type: TC
Location: 50158 - 50832 (-)
Gene ID: HRGMv2_2928_7_49
Type: pfam
Location: 50825 - 51349 (-)
Gene ID: HRGMv2_2928_7_50
Type: TC
Location: 51349 - 52296 (-)
Gene ID: HRGMv2_2928_7_51
Type: TC
Location: 52335 - 53612 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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