Cluster: HRGMv2_2928_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2928
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2928_23 | HRGMv2_2928_23_2 | 513 | 3551 | - | CBM13 | CBM13 | PL11 |
| TC | HRGMv2_2928_23 | HRGMv2_2928_23_3 | 3913 | 4431 | - | 2.A.87.3.1 |
| pfam | HRGMv2_2928_23 | HRGMv2_2928_23_4 | 4400 | 4786 | - | NusG_II |
| pfam | HRGMv2_2928_23 | HRGMv2_2928_23_5 | 4788 | 5309 | - | CobA_CobO_BtuR |
| CAZyme | HRGMv2_2928_23 | HRGMv2_2928_23_6 | 5549 | 9385 | + | CBM77 | PL1 | PL9_1 |
Gene ID: HRGMv2_2928_23_2
Type: CAZyme
Location: 513 - 3551 (-)
Type: CAZyme
Location: 513 - 3551 (-)
Gene ID: HRGMv2_2928_23_3
Type: TC
Location: 3913 - 4431 (-)
Type: TC
Location: 3913 - 4431 (-)
Gene ID: HRGMv2_2928_23_4
Type: pfam
Location: 4400 - 4786 (-)
Type: pfam
Location: 4400 - 4786 (-)
Gene ID: HRGMv2_2928_23_5
Type: pfam
Location: 4788 - 5309 (-)
Type: pfam
Location: 4788 - 5309 (-)
Gene ID: HRGMv2_2928_23_6
Type: CAZyme
Location: 5549 - 9385 (+)
Type: CAZyme
Location: 5549 - 9385 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UBA5884
Species
UBA5884 sp018376535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.