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Cluster: HRGMv2_2928_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2928_17 HRGMv2_2928_17_29 36066 36842 - 3.A.1.3.14
TC HRGMv2_2928_17 HRGMv2_2928_17_30 36858 38372 - 3.A.1.3.12
pfam HRGMv2_2928_17 HRGMv2_2928_17_31 38638 41190 + RicinB_lectin_2 | RicinB_lectin_2
NULL(UNKNOWN) HRGMv2_2928_17 HRGMv2_2928_17_32 41363 41608 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2928_17 HRGMv2_2928_17_33 41608 43704 + 3.A.3.32.6
pfam HRGMv2_2928_17 HRGMv2_2928_17_34 43758 46277 - Dockerin_1
CAZyme HRGMv2_2928_17 HRGMv2_2928_17_35 46292 47179 - GT8
pfam HRGMv2_2928_17 HRGMv2_2928_17_36 47287 49758 - Dockerin_1 | DUF4832 | DUF4874
TC HRGMv2_2928_17 HRGMv2_2928_17_37 49911 51464 + 3.A.1.121.4
Gene ID: HRGMv2_2928_17_29
Type: TC
Location: 36066 - 36842 (-)
Gene ID: HRGMv2_2928_17_30
Type: TC
Location: 36858 - 38372 (-)
Gene ID: HRGMv2_2928_17_31
Type: pfam
Location: 38638 - 41190 (+)
Gene ID: HRGMv2_2928_17_32
Type:
Location: 41363 - 41608 (+)
Gene ID: HRGMv2_2928_17_33
Type: TC
Location: 41608 - 43704 (+)
Gene ID: HRGMv2_2928_17_34
Type: pfam
Location: 43758 - 46277 (-)
Gene ID: HRGMv2_2928_17_35
Type: CAZyme
Location: 46292 - 47179 (-)
Gene ID: HRGMv2_2928_17_36
Type: pfam
Location: 47287 - 49758 (-)
Gene ID: HRGMv2_2928_17_37
Type: TC
Location: 49911 - 51464 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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